1996 Houston (4-1), Southern Mississippi (4-1)
1997 Southern Mississippi (6-0)
1998 Tulane (6-0)
1999 Southern Mississippi (6-0)
2000 Louisville (6-1)
2001 Louisville (6-1)
2002 Cincinnati (6-2), Texas Christian (6-2)
2003 Southern Mississippi (8-0)
2004 Louisville (8-0)
2005 Tulsa (6-2 W) 44, Central Florida (7-1 E) 27
2006 Houston (7-1 W) 34, Southern Mississippi (6-2 E) 20
2007 Central Florida (7-1 E) 44, Tulsa (6-2 W) 25
2008 East Carolina (6-2 E) 27, Tulsa (7-1 W) 24
2009 East Carolina (7-1 E) 38, Houston (6-2 W) 32
2010 Central Florida (7-1 E) 17, SMU (6-2 W) 7 
2011 Southern Mississippi (6-2 E) 49, Houston (8-0 W) 28

C-USA championship game results listed for 2005-